PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011078454.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family TCP
Protein Properties Length: 324aa    MW: 35968.1 Da    PI: 9.1361
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011078454.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP154.27.6e-48331842135
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...........ssssa.....seceaessss 80 
                     +gkkdrhski+T++g RdRR+Rls+++a++fFdLqd+LG+dk+sktieWL++++k+aikelt+            +s+++     sece +s  +
  XP_011078454.1  33 TGKKDRHSKICTAQGVRDRRMRLSLQVARKFFDLQDMLGYDKASKTIEWLFNKSKKAIKELTKEsitqgnhnicnTSDAKsesflSECEVVSGTE 127
                     79**************************************************************9988888887633333333334443333333 PP

             TCP  81 sasnsssg.....kaaksaakskksqksaasalnlak.esrakarararertrekmriknk 135
                     ++sn   +     + ++ + k +k+++++a+ ++++  esr+kararar rtrekm+ik+ 
  XP_011078454.1 128 ENSN---TeiknvSGKTCE-KDEKKSRKTANISKPNTrESREKARARARCRTREKMMIKWC 184
                     3333...244344222222.333333333333333335********************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.1E-4733180IPR005333Transcription factor, TCP
PROSITE profilePS5136937.263593IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137011.128161178IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MFPSGKADDQ PVSNGVVGPV KRRNLGGGPR KRTGKKDRHS KICTAQGVRD RRMRLSLQVA  60
RKFFDLQDML GYDKASKTIE WLFNKSKKAI KELTKESITQ GNHNICNTSD AKSESFLSEC  120
EVVSGTEENS NTEIKNVSGK TCEKDEKKSR KTANISKPNT RESREKARAR ARCRTREKMM  180
IKWCKSSPNR EKLGSSNSPF EGIDQESGPQ NNSQQERVSP CGADDNYPSL EVADVGTIEK  240
LLGNFSSSSS TSDHPISDYH YCSAAVSCCI DPNSSFMGFL GNWDLLMNND KPNSSLTTQV  300
SLADNLNSSV YSSATMTNFP FFHQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011078454.10.0PREDICTED: transcription factor TCP12-like
TrEMBLA0A022Q5W97e-71A0A022Q5W9_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24362359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.17e-31TCP domain protein 12